itsdm-package | Isolation forest-based presence-only species distribution modeling |
cmcc_bioclim | Download historic Bioclimatic indicators (BIOs) named CMCC-BioClimInd. |
convert_to_pa | Convert predicted suitability to presence-absence map. |
dim_reduce | Reduce dimensions using auto-correlation between numeric raster layers. |
evaluate_po | Evaluate the model based on presence-only data. |
future_cmcc_bioclim | Download future Bioclimatic indicators (BIOs) named CMCC-BioClimInd. |
future_worldclim2 | A function to parse the future climate from worldclim version 2.1. |
independent_response | Calculate independent responses of each variables. |
isotree_po | Function to run extended isolation forest as SDM. |
itsdm | Isolation forest-based presence-only species distribution modeling |
mainland_africa | Boundary of mainland Africa |
marginal_response | Calculate marginal responses of each variables. |
occ_virtual_species | Occurrence dataset of a virtual species |
plot.EnvironmentalOutlier | Function to plot suspicious outliers in an observation dataset. |
plot.IndependentResponse | Function to plot independent response curves. |
plot.MarginalResponse | Function to plot marginal response curves. |
plot.PAConversion | Function to plot results of conversion to PA. |
plot.POEvaluation | Function to plot presence-only evaluation. |
plot.ShapDependence | Function to plot variable dependence obtained from SHAP test. |
plot.SpatialResponse | Function to plot spatial variable dependence maps. |
plot.VariableAnalysis | Function to plot variable importance. |
plot.VariableContribution | Function to plot variable contribution for target observations. |
print.EnvironmentalOutlier | Print summary information from PAConversion object. |
print.PAConversion | Print summary information from PAConversion object. |
print.POEvaluation | Print summary information from presence-only evaluation object. |
print.POIsotree | Print summary information from POIsotree object. |
print.ReducedImageStack | Print summary information from ReducedImageStack object. |
print.VariableAnalysis | Print summary information from variable importance object. |
probability | Estimate suitability on stars object using trained 'isolation.forest' model. |
shap_dependence | Calculate Shapley value based variable dependence. |
spatial_response | Calculate spatial response or dependence plot. |
suspicious_env_outliers | Function to detect suspicious outliers based on environmental variables. |
variable_analysis | Function to evaluate relative importance of each variable. |
variable_contrib | Evaluate variable contributions for targeted observations. |
worldclim2 | Download environmental variables made by worldclim version 2.1. |