Fit Continuous-Time State-Space and Latent Variable Models for Quality Control of Argos Satellite (and Other) Telemetry Data and for Estimating Movement Behaviour


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Documentation for package ‘foieGras’ version 0.7-6

Help Pages

foieGras-package 'foieGras'
dummy Roxygen commands
ellie Southern elephant seal Argos satellite data (1 individual, sub-sampled for testing speed)
emf emf
fit_mpm fit a a Move Persistence Model (mpm)
fit_ssm Fit a continuous-time state-space model to filter Argos satellite geolocation data
fmap fmap
foieGras 'foieGras'
grab grab tibble's by name from a foieGras model object
join join an mpm-estimated behavioural index to ssm-predicted locations
mpm_control Control Values for 'fit_mpm'.
osar calculate one-step-ahead (prediction) residuals from a 'foieGras' fit
plot.fG_mpm plot
plot.fG_osar plot
plot.fG_sim plot
plot.fG_simfit plot
plot.fG_ssm plot
print print 'foieGras' fit object summary information
print.ssm print 'foieGras' fit object summary information
res foieGras example osar residuals object
sese Southern elephant seal Argos satellite data (5 individuals)
sese1 Southern elephant seal Argos satellite data (1 individual)
sese2 Southern elephant seal Argos satellite data (2 highly sub-sampled individuals)
sim simulate animal tracks
simfit simulate animal tracks from a 'fG_ssm' fit
ssm_control Control Values for 'fit_ssm'.
xm foieGras example mpm fit object